CKAN_00644000 protein (Cinnamomum micranthum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CKAN_00644000

AP2-like protein ethylene-responsive transcription factor ANT. (652 aa)

Predicted Functional Partners:

CKAN_00635600

0.644

CKAN_01394600

0.632

CKAN_01241200

0.573

CKAN_01801800

0.528

CKAN_02339100

0.528

CKAN_02334500

0.520

CKAN_01204200

0.502

CKAN_01485900

0.502

CKAN_01567100

0.502

CKAN_00068600

0.502

Your Current Organism:

Cinnamomum micranthum

NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CKAN_00068600	CKAN_00635600	A0A443N1Q6	A0A443NH59	Rac-like GTP-binding protein ARAC7 isoform X2.	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.	0.850
CKAN_00068600	CKAN_00644000	A0A443N1Q6	A0A3S3MDR6	Rac-like GTP-binding protein ARAC7 isoform X2.	AP2-like protein ethylene-responsive transcription factor ANT.	0.502
CKAN_00068600	CKAN_01241200	A0A443N1Q6	A0A3S3MW86	Rac-like GTP-binding protein ARAC7 isoform X2.	3-phosphoinositide-dependent protein kinase 2-like protein.	0.703
CKAN_00068600	CKAN_01801800	A0A443N1Q6	A0A443PDZ9	Rac-like GTP-binding protein ARAC7 isoform X2.	Uncharacterized protein.	0.959
CKAN_00068600	CKAN_02334500	A0A443N1Q6	A0A3S3NTK9	Rac-like GTP-binding protein ARAC7 isoform X2.	Protein enabled.	0.706
CKAN_00068600	CKAN_02339100	A0A443N1Q6	A0A443PTL1	Rac-like GTP-binding protein ARAC7 isoform X2.	Uncharacterized protein.	0.959
CKAN_00635600	CKAN_00068600	A0A443NH59	A0A443N1Q6	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.	Rac-like GTP-binding protein ARAC7 isoform X2.	0.850
CKAN_00635600	CKAN_00644000	A0A443NH59	A0A3S3MDR6	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.	AP2-like protein ethylene-responsive transcription factor ANT.	0.644
CKAN_00635600	CKAN_01204200	A0A443NH59	A0A3S3MGN6	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.	Ras domain-containing protein.	0.850
CKAN_00635600	CKAN_01241200	A0A443NH59	A0A3S3MW86	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.	3-phosphoinositide-dependent protein kinase 2-like protein.	0.402
CKAN_00635600	CKAN_01394600	A0A443NH59	A0A3S3P806	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.	Septum-promoting GTP-binding protein 1.	0.659
CKAN_00635600	CKAN_01485900	A0A443NH59	A0A3S3MTR5	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.	Rac-like GTP-binding protein 5.	0.850
CKAN_00635600	CKAN_01567100	A0A443NH59	A0A3S3QKW3	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.	Rac-like GTP-binding protein RAC2.	0.850
CKAN_00635600	CKAN_01801800	A0A443NH59	A0A443PDZ9	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.	Uncharacterized protein.	0.708
CKAN_00635600	CKAN_02334500	A0A443NH59	A0A3S3NTK9	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.	Protein enabled.	0.898
CKAN_00635600	CKAN_02339100	A0A443NH59	A0A443PTL1	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.	Uncharacterized protein.	0.708
CKAN_00644000	CKAN_00068600	A0A3S3MDR6	A0A443N1Q6	AP2-like protein ethylene-responsive transcription factor ANT.	Rac-like GTP-binding protein ARAC7 isoform X2.	0.502
CKAN_00644000	CKAN_00635600	A0A3S3MDR6	A0A443NH59	AP2-like protein ethylene-responsive transcription factor ANT.	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.	0.644
CKAN_00644000	CKAN_01204200	A0A3S3MDR6	A0A3S3MGN6	AP2-like protein ethylene-responsive transcription factor ANT.	Ras domain-containing protein.	0.502
CKAN_00644000	CKAN_01241200	A0A3S3MDR6	A0A3S3MW86	AP2-like protein ethylene-responsive transcription factor ANT.	3-phosphoinositide-dependent protein kinase 2-like protein.	0.573

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

34

average node degree:

6.18

avg. local clustering coefficient:

0.894

expected number of edges:

92

PPI enrichment p-value:

1

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

7 of 102

1.21

1.35

1.90e-05

GO:0010467

Gene expression

9 of 179

1.08

1.23

2.28e-06

GO:0009059

Macromolecule biosynthetic process

9 of 199

1.03

1.15

2.84e-06

GO:0031564

Transcription antitermination

2 of 4

2.07

1.04

0.0109

GO:0006353

DNA-templated transcription, termination

2 of 6

1.9

0.92

0.0174

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003743

Translation initiation factor activity

3 of 5

2.15

1.66

0.00063

GO:0003924

GTPase activity

3 of 17

1.62

1.12

0.0042

GO:0003723

RNA binding

6 of 94

1.18

1.06

0.00059

GO:0019843

rRNA binding

4 of 42

1.35

1.01

0.0034

GO:0003735

Structural constituent of ribosome

4 of 58

1.21

0.88

0.0051

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

4 of 64

1.17

0.74

0.0129

GO:0005622

Intracellular anatomical structure

10 of 900

0.42

0.31

0.0129

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:277

Mixed, incl. Ribosome biogenesis, and Transcription termination

4 of 6

2.2

2.84

2.02e-06

CL:102

Structural constituent of ribosome, and Transcription, DNA-templated

10 of 108

1.34

2.22

1.46e-10

CL:105

Structural constituent of ribosome, and Proton channel activity

9 of 92

1.36

2.22

7.95e-10

CL:125

Structural constituent of ribosome

4 of 40

1.37

1.2

0.00087

CL:112

Structural constituent of ribosome

5 of 72

1.22

1.13

0.00041

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

ane03010

Ribosome

4 of 50

1.28

0.97

0.0033

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0694

RNA-binding

5 of 54

1.34

1.28

0.00033

KW-0699

rRNA-binding

4 of 36

1.42

1.2

0.0012

KW-0689

Ribosomal protein

4 of 56

1.23

0.91

0.0040

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (10%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About