STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00662000TRAM domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (550 aa)    
Predicted Functional Partners:
CKAN_02530500
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
    0.906
CKAN_01625400
Transducin beta-like protein 3.
   
    0.884
CKAN_01480300
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
  
  
 0.829
CKAN_02345700
Peter Pan-like protein isoform X1.
   
    0.813
CKAN_01791600
U3 small nucleolar RNA-associated protein 18.
   
    0.812
CKAN_01743800
tRNA (adenine(58)-N(1))-methyltransferase.
   
  
 0.810
CKAN_01451500
tRNA (adenine(58)-N(1))-methyltransferase.
   
  
 0.810
CKAN_02654200
tRNA adenine58-N1-methyltransferase catalytic subunit TRMT61A.
   
  
 0.810
CKAN_02202100
DEAD-box ATP-dependent RNA helicase 29.
  
    0.805
CKAN_02555400
Putative methyltransferase NSUN6 isoform X2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.789
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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