STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00720500Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic. (139 aa)    
Predicted Functional Partners:
CKAN_00420900
Chromatin structure-remodeling complex protein SYD-like protein isoform X1.
   
 0.780
CKAN_02533900
Chromatin structure-remodeling complex protein SYD isoform X1.
   
 0.780
CKAN_00652800
WD_REPEATS_REGION domain-containing protein.
    
 0.725
CKAN_02501500
SET domain-containing protein.
   
 0.723
CKAN_02521800
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.667
CKAN_01845700
Ankyrin-1 isoform X1.
    
 0.646
CKAN_01285900
Outer envelope protein 64, mitochondrial.
    
 0.635
CKAN_01202100
Translocon at the outer membrane of chloroplasts 64.
    
 0.635
CKAN_01202500
Outer envelope protein 64, chloroplastic-like protein.
    
 0.635
CKAN_02079000
Putative lysine-specific demethylase ELF6 isoform X1.
    
 0.622
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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