STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01201100Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (411 aa)    
Predicted Functional Partners:
CKAN_02543800
Dihydroxy-acid dehydratase, chloroplastic.
  
 0.978
CKAN_01260500
2-isopropylmalate synthase A-like protein; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 0.967
CKAN_00771400
Threonine dehydratase.
  
 
 0.921
CKAN_00313500
Pyruvate carboxyltransferase.
  
 0.913
CKAN_00440100
Hydroxymethylglutaryl-CoA lyase, mitochondrial-like protein isoform X1.
  
 0.913
CKAN_00322700
Homoserine dehydrogenase.
  
 
 0.891
CKAN_02495100
Histidinol-phosphate aminotransferase, chloroplastic isoform X1.
  
 
 0.888
CKAN_01930100
2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial isoform X1.
  
 
 0.887
CKAN_01593300
Thiamine pyrophosphate-requiring enzyme.
  
 0.885
CKAN_02255300
Acetolactate synthase.
  
 0.885
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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