STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00502600Tyrosine--tRNA ligase. (286 aa)    
Predicted Functional Partners:
CKAN_02202300
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.918
CKAN_01929200
Putative methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.918
CKAN_00502500
Aminoacyl-tRNA synthetase.
 
     0.907
CKAN_01516400
Tyrosine--tRNA ligase 1, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
 0.906
CKAN_02142400
Putative methionine--tRNA ligase isoform X2.
  
 0.878
CKAN_01005200
Methionine--tRNA ligase, chloroplastic/mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.860
CKAN_01741400
Phenylalanine--tRNA ligase beta subunit, cytoplasmic-like protein isoform X1.
  
  
 0.844
CKAN_00535200
Glycyl-tRNA synthetase-like protein.
  
  
 0.820
CKAN_02413700
Aminoacyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.817
CKAN_01257700
Isoleucine--tRNA ligase, cytoplasmic-like protein isoform X1; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.817
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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