STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01014200TPR repeat-containing protein ZIP4. (932 aa)    
Predicted Functional Partners:
CKAN_02332300
ATP-dependent DNA helicase MER3.
   
 
 0.563
CKAN_01560600
DNA mismatch repair protein MutS.
   
  
 0.553
CKAN_00856700
Meiosis-specific protein ASY1 isoform X1.
   
 
 0.533
CKAN_00857100
Meiosis-specific protein ASY1 isoform X3.
   
 
 0.533
CKAN_02217100
DNA mismatch repair protein.
    
 
 0.530
CKAN_02187200
DNA mismatch repair protein MLH1 isoform X2.
    
 
 0.530
CKAN_01855200
Uncharacterized protein.
    
   0.522
CKAN_00303400
ERCC4 domain-containing protein.
      
 0.507
CKAN_00516400
Zinc transporter 2-like protein.
      
 0.503
CKAN_00114100
DExH-box ATP-dependent RNA helicase DExH14 isoform X2.
   
 
 0.494
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.