STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00359300Cation-transporting P-type ATPase. (939 aa)    
Predicted Functional Partners:
CKAN_01652600
HMA domain-containing protein.
  
 0.987
CKAN_00598800
Protein SODIUM POTASSIUM ROOT DEFECTIVE 2-like protein.
    
 0.619
CKAN_00126600
L-ascorbate oxidase.
  
 
 0.605
CKAN_01112700
Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.
  
 
 0.605
CKAN_00172700
Peroxisome biogenesis protein 2 isoform X4.
  
 
 0.605
CKAN_00516900
Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.
  
 
 0.605
CKAN_00658300
L-ascorbate oxidase-like protein; Belongs to the multicopper oxidase family.
  
 
 0.605
CKAN_00995100
Laccase-3-like protein.
  
 
 0.605
CKAN_00516500
Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.
  
 
 0.605
CKAN_01023700
Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.
  
 
 0.605
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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