CKAN_00484000 protein (Cinnamomum micranthum)

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

CKAN_00484000

30S ribosomal protein S1, chloroplastic-like protein isoform X3. (272 aa)

Predicted Functional Partners:

CKAN_01637100

0.989

CKAN_02508600

0.989

CKAN_00494700

0.987

CKAN_00565500

0.986

CKAN_01182300

0.985

CKAN_01965700

0.983

CKAN_01212700

0.982

CKAN_01282300

0.982

CKAN_00645200

0.978

CKAN_00646000

0.978

Your Current Organism:

Cinnamomum micranthum

NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CKAN_00484000	CKAN_00494700	A0A3S3MMK2	A0A443NDA4	30S ribosomal protein S1, chloroplastic-like protein isoform X3.	U3 small nucleolar RNA-associated protein 14 A.	0.987
CKAN_00484000	CKAN_00565500	A0A3S3MMK2	A0A3S3M4Y2	30S ribosomal protein S1, chloroplastic-like protein isoform X3.	Nucleolar protein 14.	0.986
CKAN_00484000	CKAN_00645200	A0A3S3MMK2	A0A443NHD1	30S ribosomal protein S1, chloroplastic-like protein isoform X3.	U3 small nucleolar RNA-associated protein 4.	0.978
CKAN_00484000	CKAN_00646000	A0A3S3MMK2	A0A443NHG1	30S ribosomal protein S1, chloroplastic-like protein isoform X3.	Uncharacterized protein.	0.978
CKAN_00484000	CKAN_01182300	A0A3S3MMK2	A0A3S3MVA8	30S ribosomal protein S1, chloroplastic-like protein isoform X3.	WD40 repeat.	0.985
CKAN_00484000	CKAN_01212700	A0A3S3MMK2	A0A3S3N9N6	30S ribosomal protein S1, chloroplastic-like protein isoform X3.	Ribosomal protein S4/S9.	0.982
CKAN_00484000	CKAN_01282300	A0A3S3MMK2	A0A443NZU7	30S ribosomal protein S1, chloroplastic-like protein isoform X3.	40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family.	0.982
CKAN_00484000	CKAN_01637100	A0A3S3MMK2	A0A3S3PBV2	30S ribosomal protein S1, chloroplastic-like protein isoform X3.	BP28.	0.989
CKAN_00484000	CKAN_01965700	A0A3S3MMK2	A0A3S3QU69	30S ribosomal protein S1, chloroplastic-like protein isoform X3.	Nucleolar complex protein 4 isoform X1.	0.983
CKAN_00484000	CKAN_02508600	A0A3S3MMK2	A0A3S3R5L6	30S ribosomal protein S1, chloroplastic-like protein isoform X3.	Nucleolar protein 6 isoform X1.	0.989
CKAN_00494700	CKAN_00484000	A0A443NDA4	A0A3S3MMK2	U3 small nucleolar RNA-associated protein 14 A.	30S ribosomal protein S1, chloroplastic-like protein isoform X3.	0.987
CKAN_00494700	CKAN_00565500	A0A443NDA4	A0A3S3M4Y2	U3 small nucleolar RNA-associated protein 14 A.	Nucleolar protein 14.	0.999
CKAN_00494700	CKAN_00645200	A0A443NDA4	A0A443NHD1	U3 small nucleolar RNA-associated protein 14 A.	U3 small nucleolar RNA-associated protein 4.	0.999
CKAN_00494700	CKAN_00646000	A0A443NDA4	A0A443NHG1	U3 small nucleolar RNA-associated protein 14 A.	Uncharacterized protein.	0.997
CKAN_00494700	CKAN_01182300	A0A443NDA4	A0A3S3MVA8	U3 small nucleolar RNA-associated protein 14 A.	WD40 repeat.	0.999
CKAN_00494700	CKAN_01212700	A0A443NDA4	A0A3S3N9N6	U3 small nucleolar RNA-associated protein 14 A.	Ribosomal protein S4/S9.	0.994
CKAN_00494700	CKAN_01282300	A0A443NDA4	A0A443NZU7	U3 small nucleolar RNA-associated protein 14 A.	40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family.	0.998
CKAN_00494700	CKAN_01637100	A0A443NDA4	A0A3S3PBV2	U3 small nucleolar RNA-associated protein 14 A.	BP28.	0.997
CKAN_00494700	CKAN_01965700	A0A443NDA4	A0A3S3QU69	U3 small nucleolar RNA-associated protein 14 A.	Nucleolar complex protein 4 isoform X1.	0.998
CKAN_00494700	CKAN_02508600	A0A443NDA4	A0A3S3R5L6	U3 small nucleolar RNA-associated protein 14 A.	Nucleolar protein 6 isoform X1.	0.998

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Network Stats

number of nodes:

11

number of edges:

54

average node degree:

9.82

avg. local clustering coefficient:

0.982

expected number of edges:

11

PPI enrichment p-value:

< 1.0e-16

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009231

Riboflavin biosynthetic process

4 of 8

2.65

3.26

8.05e-07

GO:0042364

Water-soluble vitamin biosynthetic process

5 of 31

2.16

2.99

8.05e-07

GO:0044283

Small molecule biosynthetic process

6 of 412

1.11

0.96

0.00088

GO:0018130

Heterocycle biosynthetic process

6 of 482

1.05

0.85

0.0018

GO:0044271

Cellular nitrogen compound biosynthetic process

7 of 770

0.91

0.73

0.0017

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:9972

Riboflavin metabolic process, and Response of Mtb to phagocytosis

6 of 11

2.69

5.77

7.85e-12

CL:9760

Mixed, incl. Metabolism of nucleotides, and Metabolism of water-soluble vitamins and cofactors

7 of 164

1.58

2.42

1.15e-07

CL:9976

Riboflavin metabolic process

2 of 5

2.55

1.14

0.0082

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00740

Riboflavin metabolism

5 of 28

2.2

3.7

2.14e-08

map01110

Biosynthesis of secondary metabolites

6 of 860

0.79

0.54

0.0109

map01100

Metabolic pathways

9 of 2837

0.45

0.32

0.0216

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-9637690

Response of Mtb to phagocytosis

2 of 4

2.65

0.99

0.0162

MAP-9637687

Suppression of phagosomal maturation

2 of 4

2.65

0.99

0.0162

MAP-9636383

Prevention of phagosomal-lysosomal fusion

2 of 4

2.65

0.99

0.0162

MAP-9635486

Infection with Mycobacterium tuberculosis

2 of 6

2.47

0.98

0.0162

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0009349

Riboflavin synthase complex

2 of 4

2.65

0.98

0.0166

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