STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01575600Glycoside hydrolase. (1161 aa)    
Predicted Functional Partners:
CKAN_00327900
Glucosidase 2 subunit beta isoform X1.
   
 0.932
CKAN_00418500
Glucosidase 2 subunit beta.
   
 0.932
CKAN_02692600
Glucosidase 2 subunit beta.
   
 0.932
CKAN_00288300
Mannosyl-oligosaccharide glucosidase GCS1.
   
 0.888
CKAN_02555800
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
   
 
 0.854
CKAN_00732400
Carbohydrate binding module family 20.
  
 
 0.823
CKAN_01581800
Calnexin.
    
 0.820
CKAN_02003500
Calnexin 1-like protein.
    
 0.820
CKAN_02267900
Magnesium transporter protein 1.
    
 0.802
CKAN_01892200
4-alpha-glucanotransferase.
    
 0.799
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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