STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00104600RNA polymerase II subunit 5-mediating protein isoform X2. (391 aa)    
Predicted Functional Partners:
CKAN_00995900
Protein UXT isoform X4.
    
 
 0.924
CKAN_02607600
RuvB-like helicase; Belongs to the RuvB family.
    
 
 0.898
CKAN_02555600
Prefoldin subunit 6 isoform X1.
    
 
 0.891
CKAN_00167900
RuvB-like helicase; Belongs to the RuvB family.
    
 
 0.888
CKAN_00443500
DNA-directed RNA polymerases II and IV subunit 5A.
    
 
 0.860
CKAN_01124300
DNA-directed RNA polymerases IV and V subunit 5B-like protein.
    
 
 0.860
CKAN_02649100
DNA-directed RNA polymerases II and IV subunit 5A.
    
 
 0.860
CKAN_00488900
RNA polymerase II-associated protein 3 isoform X2.
    
 
 0.859
CKAN_00152800
DNA-directed RNA polymerases I and III subunit RPAC2.
   
   0.774
CKAN_00316700
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.739
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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