STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01396500Thioredoxin-like protein fold. (406 aa)    
Predicted Functional Partners:
CKAN_02196500
GTP binding domain-containing protein.
  
 0.952
CKAN_02226100
GTP binding domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 0.952
CKAN_00091600
GTP binding domain-containing protein.
  
 0.952
CKAN_02225700
GTP binding domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 0.952
CKAN_00626500
Mitochondrial tRNA-specific 2-thiouridylase 1.
  
 0.871
CKAN_02063600
Choline monooxygenase, chloroplastic isoform X1.
   
 
 0.706
CKAN_02063700
Choline monooxygenase, chloroplastic isoform X1.
   
 
 0.706
CKAN_02452600
Stress-response A/B barrel domain-containing protein HS1 isoform X2.
   
 
 0.706
CKAN_00354200
Stress responsive alpha-beta barrel.
   
 
 0.706
CKAN_00360700
FAD dependent oxidoreductase.
   
 
 0.706
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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