STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01428400DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like protein. (1164 aa)    
Predicted Functional Partners:
CKAN_00890300
Protein SDE2.
    
 0.923
CKAN_00494700
U3 small nucleolar RNA-associated protein 14 A.
   
 0.922
CKAN_01965700
Nucleolar complex protein 4 isoform X1.
   
 0.900
CKAN_01791600
U3 small nucleolar RNA-associated protein 18.
   
 0.899
CKAN_01488900
Pre-mRNA-splicing factor SLU7.
    
 0.890
CKAN_02508600
Nucleolar protein 6 isoform X1.
   
 0.889
CKAN_00511900
Something about silencing protein 10.
   
 0.888
CKAN_01880800
AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.
    
 0.885
CKAN_01563900
AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.
    
 0.885
CKAN_02424500
Rhodanese-like domain-containing protein.
    
 0.885
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.