STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01469000Alpha/beta hydrolase fold-1. (316 aa)    
Predicted Functional Partners:
CKAN_00302800
Triacylglycerol lipase SDP1.
    
 0.896
CKAN_00845700
Patatin/Phospholipase A2-related.
    
 0.896
CKAN_01328900
Caffeoylshikimate esterase.
  
  
 
0.883
CKAN_02665600
Long chain aycl-CoA synthetase 9.
    
 0.883
CKAN_00133600
AMP-dependent synthetase/ligase.
    
 0.878
CKAN_00255100
AMP-dependent synthetase/ligase.
    
 0.878
CKAN_00485500
Long chain aycl-CoA synthetase 1.
    
 0.878
CKAN_02252000
Long chain acyl-CoA synthetase 4.
    
 0.875
CKAN_02586000
AMP-dependent synthetase/ligase.
    
 0.875
CKAN_02472100
AMP-dependent synthetase/ligase.
    
 0.875
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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