STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01948500Miraculin-like protein. (101 aa)    
Predicted Functional Partners:
CKAN_01661100
Ubiquitin-60S ribosomal protein L40-like protein.
    
 0.635
CKAN_00947100
Ubiquitin-60S ribosomal protein L40-like protein.
    
 0.635
CKAN_01793500
Ubiquitin-60S ribosomal protein L40 isoform X1.
    
 0.635
CKAN_00992500
Small GTPase superfamily.
   
 
 0.587
CKAN_01462100
Peroxisome biogenesis protein 6 isoform X1.
     
 0.563
CKAN_02441400
Peroxisome biogenesis protein 5.
    
  0.561
CKAN_02749600
Peroxisome biogenesis protein 1 isoform X1.
     
 0.545
CKAN_00571000
Rab proteins geranylgeranyltransferase component; Substrate-binding subunit of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins; Belongs to the Rab GDI family.
     
 0.517
CKAN_00409300
Ras-related protein RHN1 isoform X3.
   
 0.512
CKAN_00878500
Trihelix transcription factor ASR3-like protein.
   
 0.512
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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