STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01231000Uncharacterized protein. (541 aa)    
Predicted Functional Partners:
CKAN_01661100
Ubiquitin-60S ribosomal protein L40-like protein.
    
  0.718
CKAN_00947100
Ubiquitin-60S ribosomal protein L40-like protein.
    
  0.718
CKAN_01793500
Ubiquitin-60S ribosomal protein L40 isoform X1.
    
  0.718
CKAN_01966200
TNF receptor-associated factor family protein isoform X2.
    
 0.599
CKAN_01820100
Protein SPA1-RELATED 3-like protein isoform X2.
    
 0.599
CKAN_00917000
E3 ubiquitin-protein ligase COP1.
    
 0.599
CKAN_01533300
Protein SPA1-RELATED 3-like protein isoform X2.
    
 0.599
CKAN_00890300
Protein SDE2.
   
 0.491
CKAN_00891500
Phosphatidylinositol 3-/4-kinase; Belongs to the PI3/PI4-kinase family.
   
 0.476
CKAN_02696400
Phosphatidylinositol 3-/4-kinase; Belongs to the PI3/PI4-kinase family.
   
 0.476
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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