STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01647000Putative mitochondrial intermediate peptidase, mitochondrial. (99 aa)    
Predicted Functional Partners:
CKAN_01568100
Frataxin, mitochondrial.
   
 
 0.557
CKAN_00485400
Putative Xaa-Pro aminopeptidase 3 isoform X3.
   
 
 0.536
CKAN_02523600
Aldehyde dehydrogenase family 7 member A1; Belongs to the aldehyde dehydrogenase family.
   
 
 0.534
CKAN_00188200
Xaa-Pro dipeptidase.
   
 
 0.522
CKAN_02174400
Presequence protease 2, chloroplastic/mitochondrial.
    
 
 0.521
CKAN_02082900
Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.
      
 0.473
CKAN_01555000
Peptidase M48.
  
  
 0.457
CKAN_00909800
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
      
 0.454
CKAN_02066100
Mitochondrial inner membrane protease subunit 2 isoform X1.
      
 0.447
CKAN_02094000
Tripeptidyl-peptidase 2.
   
  
 0.434
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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