STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00458200Putative nuclease HARBI1. (201 aa)    
Predicted Functional Partners:
CKAN_02148600
Putative nuclease HARBI1.
  
     0.532
CKAN_00259400
DDE_4 domain-containing protein.
  
     0.531
CKAN_01509200
Putative nuclease HARBI1.
  
     0.531
CKAN_02664500
Putative nuclease HARBI1.
  
     0.530
CKAN_00113700
DDE_4 domain-containing protein.
  
     0.530
CKAN_00155100
Protein ALP1-like protein.
  
     0.529
CKAN_01495200
Putative nuclease HARBI1 isoform X1.
  
     0.528
CKAN_00137700
Putative nuclease HARBI1.
  
     0.528
CKAN_01985400
Putative nuclease HARBI1.
  
     0.526
CKAN_01221100
Putative nuclease HARBI1.
  
     0.524
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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