STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_010585003-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. (413 aa)    
Predicted Functional Partners:
CKAN_01803100
3-isopropylmalate dehydratase large subunit, chloroplastic.
 
 0.988
CKAN_01437900
Aconitase_C domain-containing protein.
 
 0.988
CKAN_01883300
Aconitase A/isopropylmalate dehydratase small subunit.
 
 0.988
CKAN_01260500
2-isopropylmalate synthase A-like protein; Belongs to the alpha-IPM synthase/homocitrate synthase family.
 0.981
CKAN_00008100
Acetolactate synthase small subunit 2, chloroplastic-like protein.
  
 0.978
CKAN_02110300
Acetolactate synthase small subunit 2, chloroplastic.
  
 0.978
CKAN_00606800
Filament-like plant protein 7.
  
 0.967
CKAN_01174700
Filament-like plant protein 7 isoform X2.
  
 0.967
CKAN_02255300
Acetolactate synthase.
 
 0.966
CKAN_01593300
Thiamine pyrophosphate-requiring enzyme.
 
 0.964
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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