STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00715300Putative polygalacturonase. (482 aa)    
Predicted Functional Partners:
CKAN_00322600
Mitochondrial import receptor subunit TOM40-1-like protein.
   
 0.499
CKAN_01184900
Putative polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
     0.481
CKAN_02737400
Cytochrome b559 subunit alpha.
   
 
 0.470
psbD
Photosystem II D2 protein; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex.
   
 0.468
CKAN_02738200
Putative Photosystem II D2 protein.
   
 0.468
CKAN_02750400
Photosystem II protein I chloroplast.
    
 
 0.456
CKAN_00568400
Protein RIK isoform X1.
      
 0.438
CKAN_00353200
60S ribosomal protein L21-1.
   
   0.437
CKAN_00809400
60S ribosomal protein L21-1.
   
   0.437
CKAN_02531600
60S ribosomal protein L21-1.
   
   0.437
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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