STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01196300Histone deacetylase 5. (690 aa)    
Predicted Functional Partners:
CKAN_00783800
High mobility group B protein 9-like protein isoform X2.
   
 0.924
CKAN_01615000
High mobility group B protein 15-like protein isoform X1.
   
 0.924
CKAN_01614600
High mobility group B protein 15-like protein isoform X1.
   
 0.924
CKAN_02160300
High mobility group B protein 9-like protein isoform X2.
   
 0.924
CKAN_02440600
High mobility group B protein 10.
   
 0.924
CKAN_01518600
High mobility group B protein 10.
   
 0.924
CKAN_01317400
PAH domain-containing protein/Sin3_corepress domain-containing protein.
   
 0.919
CKAN_02015000
Paired amphipathic helix protein Sin3-like protein 4 isoform X1.
   
 0.919
CKAN_00277000
Retinoblastoma-related-like protein.
    
 0.915
CKAN_00193400
WD-40 repeat-containing protein MSI4-like protein.
   
 0.905
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.