STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00721500Plant transcription factor. (237 aa)    
Predicted Functional Partners:
CKAN_00686500
DNA repair protein recA 2, mitochondrial isoform X2; Belongs to the RecA family.
      
 0.502
CKAN_01191400
Primosome PriB/single-strand DNA-binding.
      
 0.502
CKAN_01354500
DNA repair RAD52-like protein 1, mitochondrial.
      
 0.445
CKAN_02543100
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
      
 0.444
CKAN_00216200
Primosome PriB/single-strand DNA-binding.
      
 0.431
CKAN_00977900
Upstream activation factor subunit UAF30-like protein isoform X2.
      
 0.431
CKAN_01774300
AAA+ ATPase domain-containing protein; Belongs to the RecA family.
      
 0.431
CKAN_01582700
DNA repair protein recA 3, mitochondrial isoform X1; Belongs to the RecA family.
      
 0.422
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.