STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01223100DNA/RNA helicase. (571 aa)    
Predicted Functional Partners:
CKAN_00430300
Splicing factor 3B subunit 1.
   
 0.990
CKAN_00617300
Splicing factor 3B subunit 3.
   
 0.965
CKAN_02661400
Cleavage/polyadenylation specificity factor.
   
 0.965
CKAN_02309400
Splicing factor 3A subunit 2.
    
 0.964
CKAN_02135500
PHD finger-like domain-containing protein 5B.
    
 0.962
CKAN_01943600
PHD finger-like domain-containing protein 5B.
    
 0.962
CKAN_01196100
Splicing factor 3B subunit 2-like protein.
   
 0.943
CKAN_00906500
Splicing factor 3B subunit 4.
    
 0.922
CKAN_02192800
Splicing factor 3B subunit 4.
    
 0.922
CKAN_00721800
RNA-binding protein 7 isoform X1.
    
 0.922
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.