STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01529400Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family. (841 aa)    
Predicted Functional Partners:
CKAN_02075500
Vacuolar protein-sorting-associated protein 33 isoform X1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.997
CKAN_00030800
Vacuolar protein sorting-associated protein 11 homolog; Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment.
    
 0.996
CKAN_01955800
Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic.
    
 0.996
CKAN_02001600
Vacuolar protein sorting-associated protein 18.
   
 0.994
CKAN_02001700
Vacuolar protein sorting-associated protein 18.
   
 0.994
CKAN_01862100
Vacuolar protein sorting-associated protein 8 isoform X2.
    
 
 0.975
CKAN_01014900
Transforming growth factor-beta receptor-associated protein 1.
   
 0.961
CKAN_00012000
Vam6/Vps39-like protein.
   
 0.954
CKAN_02345000
Vam6/Vps39-like protein.
   
 0.954
CKAN_00010800
Vam6/Vps39-like protein.
   
 0.954
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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