STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01532400Putative ubiquitin-conjugating enzyme E2 38. (533 aa)    
Predicted Functional Partners:
CKAN_02499900
Putative ubiquitin conjugation factor E4.
   
 0.901
CKAN_02489400
E3 ubiquitin-protein ligase UPL4 isoform X1.
   
 0.894
CKAN_02489600
E3 ubiquitin-protein ligase UPL4 isoform X1.
   
 0.894
CKAN_01485800
E3 ubiquitin-protein ligase UPL3-like protein.
   
 0.888
CKAN_01040000
E3 ubiquitin-protein ligase UPL3-like protein.
   
 0.888
CKAN_02378100
Anaphase-promoting complex subunit 11.
    
 0.875
CKAN_02302500
RAN GTPase-activating protein 2.
   
 0.870
CKAN_02307400
E3 ubiquitin-protein ligase KEG isoform X2.
    
 0.844
CKAN_01819500
Putative ubiquitin-conjugating enzyme E2 24.
  
  
 
0.843
CKAN_00369400
Anaphase-promoting complex subunit 4.
   
 0.834
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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