STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00843600Putative calcium-binding protein CML49. (153 aa)    
Predicted Functional Partners:
CKAN_00620300
Calpain-type cysteine protease DEK1; Belongs to the peptidase C2 family.
   
 0.918
CKAN_02329000
Protein WVD2-like protein 7 isoform X1.
   
 0.918
CKAN_01886900
NO-associated protein 1, chloroplastic/mitochondrial-like protein.
     
 0.843
CKAN_00821900
Protein transport protein SEC31 B isoform X2.
    
 
 0.777
CKAN_00331000
Protein transport protein SEC31 B-like protein.
    
 
 0.777
CKAN_01937900
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
    0.715
CKAN_00196500
GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic.
     
 0.660
CKAN_02328700
GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic.
     
 0.660
CKAN_00043300
tRNA-dihydrouridine synthase B.
    
 
 0.570
CKAN_00042700
Metallo-hydrolase/oxidoreductase superfamily protein isoform 1.
    
 
 0.570
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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