STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01641100Protein transport protein sec16. (1452 aa)    
Predicted Functional Partners:
CKAN_02033200
Protein transport protein SEC13 B-like protein; Belongs to the WD repeat SEC13 family.
    
 0.974
CKAN_01155800
Protein transport protein SEC13 B-like protein; Belongs to the WD repeat SEC13 family.
    
 0.974
CKAN_00000300
Protein transport protein Sec24-like protein.
   
 0.970
CKAN_01233700
Zinc finger protein.
   
 0.970
CKAN_00872100
Protein transport protein Sec24-like protein isoform X2.
   
 0.969
CKAN_02630800
Protein transport protein Sec24-like protein isoform X2.
   
 0.969
CKAN_00821900
Protein transport protein SEC31 B isoform X2.
   
 0.953
CKAN_00331000
Protein transport protein SEC31 B-like protein.
   
 0.953
CKAN_00297100
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.915
CKAN_00852900
Protein PRD1 isoform X1.
   
 0.915
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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