STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00025300AMP-dependent synthetase and ligase family protein. (941 aa)    
Predicted Functional Partners:
CKAN_00761900
Trans-cinnamate 4-monooxygenase; Belongs to the cytochrome P450 family.
   
 0.945
CKAN_02671900
Chalcone synthase 1; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
  
 0.943
CKAN_00809200
Phenylalanine ammonia-lyase.
    
 0.934
CKAN_00606200
Caffeoyl-CoA O-methyltransferase.
   
 0.932
CKAN_01274900
Phenylalanine ammonia-lyase.
    
 0.926
CKAN_02604300
Phenylalanine ammonia-lyase.
    
 0.926
CKAN_01094500
Caffeoylshikimate esterase-like protein isoform X1.
    
 0.925
CKAN_00384100
Cinnamoyl-CoA reductase.
  
 0.925
CKAN_00384400
Cinnamoyl-CoA reductase.
  
 0.925
CKAN_01420200
Caffeoylshikimate esterase isoform X1.
    
 0.924
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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