STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02086500Ascorbate transporter, chloroplastic. (169 aa)    
Predicted Functional Partners:
CKAN_00571200
Cytoskeletal protein Sojo-like protein.
    
 0.599
CKAN_01194300
SNAP25 protein SNAP33-like protein.
    
 0.599
CKAN_00571400
SNAP25 protein SNAP33-like protein.
    
 0.599
CKAN_02428900
SNARE-interacting protein KEULE-like protein isoform X2; Belongs to the STXBP/unc-18/SEC1 family.
    
  0.579
CKAN_02008800
SNARE-interacting protein KEULE; Belongs to the STXBP/unc-18/SEC1 family.
    
  0.579
CKAN_02009100
SNARE-interacting protein KEULE-like protein; Belongs to the STXBP/unc-18/SEC1 family.
    
  0.579
CKAN_01402600
DNAJ heat shock N-terminal domain-containing protein.
    
 0.519
CKAN_01825300
3Fe-4S ferredoxin.
    
 0.519
CKAN_01952400
Putative DNAJ heat shock N-terminal domain-containing protein.
    
 0.519
CKAN_01113100
Syntaxin-112.
    
  0.489
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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