STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02521800Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1094 aa)    
Predicted Functional Partners:
CKAN_01672600
Nucleoporin Nup120/160.
  
 0.999
CKAN_02242000
Protein SEH1 isoform X1; Belongs to the WD repeat SEC13 family.
   
 0.999
CKAN_00307700
Nuclear pore protein.
  
 0.996
CKAN_00680500
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.994
CKAN_00734700
Uncharacterized protein.
   
 0.994
CKAN_00318000
Aladin isoform X2.
   
 0.993
CKAN_00288200
Nuclear pore complex protein NUP54.
   
 0.992
CKAN_02533600
Nuclear pore complex protein NUP155.
   
 0.992
psbA
Photosystem II protein D1; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors.
   
 0.991
CKAN_00249100
Nuclear pore complex protein NUP58.
   
 0.991
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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