STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00161000Cyclin; Belongs to the cyclin family. (220 aa)    
Predicted Functional Partners:
CKAN_01834900
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase.
    
 0.904
CKAN_00360600
DNA ligase 4.
    
 0.883
CKAN_00131900
SAP domain-containing protein.
    
 0.795
CKAN_00829000
DNA repair protein XRCC4.
    
 0.769
CKAN_02319000
DNA ligase.
   
 0.757
CKAN_02319100
DNA repair metallo-beta-lactamase.
   
 0.757
CKAN_02318600
DNA repair metallo-beta-lactamase.
   
 0.757
CKAN_02318500
DNA ligase 6-like protein.
   
 0.757
CKAN_00559300
DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.
     
 0.626
CKAN_00641600
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
 0.607
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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