STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02250700Zinc finger CCCH domain-containing protein 1. (355 aa)    
Predicted Functional Partners:
CKAN_00893300
Peptidyl-prolyl cis-trans isomerase CYP57.
   
 0.991
CKAN_00570500
Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1.
    
 0.989
CKAN_02017800
Pre-mRNA-splicing factor CWC22.
    
 0.982
CKAN_00302400
Pre-mRNA-splicing factor CWC22.
    
 0.982
CKAN_02085900
Cell division cycle 5-like protein.
    
 
 0.975
CKAN_00930500
Pre-mRNA-processing factor 17 isoform X1.
    
 0.974
CKAN_01321200
WD40 repeat.
    
 0.974
CKAN_01196100
Splicing factor 3B subunit 2-like protein.
    
 
 0.965
CKAN_02309400
Splicing factor 3A subunit 2.
    
 
 0.963
CKAN_01851100
Protein CWC15.
   
 
 0.962
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.