STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00211200Tetratricopeptide repeat protein 1-like protein isoform X1. (256 aa)    
Predicted Functional Partners:
CKAN_01800800
Serine/threonine-protein kinase EDR1 isoform X1.
    
 
 0.453
CKAN_00942800
Serine/threonine-protein kinase EDR1 isoform X1.
    
 
 0.442
CKAN_00146800
Protein SGT1 A.
   
  
 0.430
CKAN_01089100
CS domain-containing protein.
   
  
 0.430
CKAN_00883900
Suppressor of G2 allele of SKP1.
   
  
 0.430
CKAN_00910500
Tetratricopeptide repeat protein 4.
      
 0.426
CKAN_01488900
Pre-mRNA-splicing factor SLU7.
   
  
 0.421
CKAN_00698200
Pentatricopeptide repeat.
   
   0.418
CKAN_01011900
Thioredoxin domain-containing protein 9.
   
   0.418
CKAN_01012500
Suppressor of RPS4-RLD 1.
      
 0.400
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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