STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01167700Zinc finger protein ZAT10. (153 aa)    
Predicted Functional Partners:
CKAN_00714100
Nitrate reductase NADH-like protein.
    
 0.881
CKAN_01923800
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
 0.881
CKAN_02206300
Nitrate reductase 2.
    
 0.881
CKAN_02206400
Nitrate reductase NADH-like protein.
    
 0.881
CKAN_00635600
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.
    
 0.808
CKAN_00420900
Chromatin structure-remodeling complex protein SYD-like protein isoform X1.
    
 0.774
CKAN_02533900
Chromatin structure-remodeling complex protein SYD isoform X1.
    
 0.774
CKAN_01469500
30-cleavage and polyadenylation specificity factor 30.
    
  0.754
CKAN_00478100
Ribosomal protein S10.
    
  0.689
CKAN_02151200
LisH domain-containing protein ARMC9-like protein.
    
  0.685
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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