STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02404500Adenylate isopentenyltransferase 3, chloroplastic. (382 aa)    
Predicted Functional Partners:
CKAN_02513700
Cytokinin hydroxylase-like protein.
     
 0.900
CKAN_01230400
Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic-like protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.898
CKAN_00269900
Isopentenyl-diphosphate Delta-isomerase I.
    
 0.851
CKAN_01614500
Isopentenyl-diphosphate Delta-isomerase I.
    
 0.851
CKAN_01052000
Solanesyl-diphosphate synthase 1, mitochondrial isoform X1; Belongs to the FPP/GGPP synthase family.
  
 
 0.849
CKAN_01471200
Solanesyl-diphosphate synthase 1, mitochondrial isoform X1; Belongs to the FPP/GGPP synthase family.
  
 
 0.849
CKAN_02433600
Fanesyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family.
    
 0.845
CKAN_01215200
Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
    
 0.845
CKAN_00257100
4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic.
     
 0.842
CKAN_02502800
Hydroxymethylbutenyl diphosphate reductase.
     
 0.842
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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