STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01986200H/ACA ribonucleoprotein complex non-core subunit NAF1-like protein. (744 aa)    
Predicted Functional Partners:
CKAN_01386300
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 
 0.944
CKAN_01276300
H/ACA ribonucleoprotein complex subunit 3-like protein.
   
 
 0.942
CKAN_01289200
Uncharacterized protein.
   
 
 0.842
CKAN_00262100
Pseudouridine synthase II.
   
 
 0.842
CKAN_02339200
H/ACA ribonucleoprotein complex subunit 4.
   
 
 0.842
CKAN_00265700
H/ACA ribonucleoprotein complex subunit 4-like protein.
   
 
 0.842
CKAN_02033100
Uncharacterized protein.
   
 
 0.842
CKAN_00873000
Uncharacterized protein.
   
 
 0.842
CKAN_01425700
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 
 0.840
CKAN_02158200
Protein LTV1.
   
    0.763
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.