STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01679200Beta-carotene hydroxylase 2, chloroplastic-like protein; Belongs to the sterol desaturase family. (310 aa)    
Predicted Functional Partners:
CKAN_00847500
Lycopene beta cyclase, chloroplastic.
   
 
 0.937
CKAN_00855000
Violaxanthin de-epoxidase, chloroplastic isoform X1; Belongs to the calycin superfamily. Lipocalin family.
     
 0.926
CKAN_02178300
Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin.
     
 0.923
CKAN_02311400
Carotene epsilon-monooxygenase, chloroplastic isoform X1; Belongs to the cytochrome P450 family.
     
 0.920
CKAN_00633900
Zeaxanthin epoxidase, chloroplastic-like protein isoform X1.
     
 0.919
CKAN_01806500
Protein LUTEIN DEFICIENT 5, chloroplastic-like protein isoform X1; Belongs to the cytochrome P450 family.
     
 0.910
CKAN_01787400
Beta-carotene isomerase D27, chloroplastic.
     
 0.894
CKAN_01407000
Lycopene cyclase-type.
   
 
 0.837
CKAN_01406700
Lycopene cyclase-type.
   
 
 0.837
CKAN_01407100
Capsanthin/capsorubin synthase, chromoplastic.
   
 
 0.837
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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