STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_012877002-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic isoform X1. (414 aa)    
Predicted Functional Partners:
CKAN_01296800
Alternative NADPH-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X2.
     
 0.921
CKAN_00683300
3-hydroxy-3-methylglutaryl coenzyme A reductase.
   
 
 0.917
CKAN_00098900
3-hydroxy-3-methylglutaryl coenzyme A reductase.
   
 
 0.917
CKAN_00239300
Geranylgeranyl diphosphate reductase, chloroplastic.
    
 0.913
CKAN_00827300
Aromatic-ring hydroxylase-like protein.
    
 0.913
CKAN_01525000
Polyprenyl synthetase.
    
 0.912
CKAN_01813100
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
    
 0.912
CKAN_01953100
4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.
    
 0.906
CKAN_00367100
UbiA prenyltransferase family.
    
 0.906
CKAN_01954300
UbiA domain-containing protein.
    
 0.906
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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