STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00548900DNA topoisomerase 1 isoform X1. (320 aa)    
Predicted Functional Partners:
CKAN_00878700
ATP-dependent DNA helicase RecQ-like protein.
  
 0.999
CKAN_00596000
Tudor domain-containing protein 3.
    
 0.993
CKAN_01579200
ATP-dependent DNA helicase mph1 isoform X1.
   
 0.986
CKAN_00448200
DNA repair endonuclease UVH1.
    
 0.982
CKAN_00448500
ERCC4 domain-containing protein.
    
 0.982
CKAN_00303400
ERCC4 domain-containing protein.
    
 0.960
CKAN_01209300
Replication protein A subunit A.
    
 0.947
CKAN_00367800
Replication protein A subunit B.
    
 0.947
CKAN_01209400
Replication protein A subunit A.
    
 0.947
CKAN_02628900
ATP-dependent DNA helicase Q-like protein 5 isoform X1.
  
 0.923
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.