STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01427700Phosphoserine aminotransferase. (431 aa)    
Predicted Functional Partners:
CKAN_02052900
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 0.959
CKAN_00609500
D-3-phosphoglycerate dehydrogenase isoform 1.
  
 0.959
CKAN_00609600
D-isomer specific 2-hydroxyacid dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 0.959
CKAN_01172500
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 0.959
CKAN_01196500
Phosphoserine phosphatase, chloroplastic.
  
 
 0.958
CKAN_01675500
C-terminal binding protein AN-like protein isoform X1.
  
 0.953
CKAN_02413500
Cysteine synthase 2 isoform X1.
  
 
 0.905
CKAN_00847000
Serine--glyoxylate aminotransferase.
    
 0.862
CKAN_00302000
Serine--glyoxylate aminotransferase.
    
 0.862
CKAN_01894600
Acetyl-CoA carboxylase 1-like protein.
    
 0.851
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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