STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01966200TNF receptor-associated factor family protein isoform X2. (345 aa)    
Predicted Functional Partners:
CKAN_02243700
Protein SPA1-RELATED 4-like protein.
   
 0.929
CKAN_00887500
Protein SPA1-RELATED 2-like protein isoform X1.
   
 0.929
CKAN_01661100
Ubiquitin-60S ribosomal protein L40-like protein.
    
  0.898
CKAN_00947100
Ubiquitin-60S ribosomal protein L40-like protein.
    
  0.898
CKAN_01793500
Ubiquitin-60S ribosomal protein L40 isoform X1.
    
  0.898
CKAN_01182500
Transcription factor HY5.
    
 0.894
CKAN_00838600
BZIP transcription factor family protein 10.
    
 0.894
CKAN_01511200
Transcription factor HY5.
    
 0.894
CKAN_02307400
E3 ubiquitin-protein ligase KEG isoform X2.
    
 0.892
CKAN_02704200
E3 ubiquitin-protein ligase PRT1-like protein.
    
 0.887
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.