STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01984400Cold shock domain-containing protein 4-like protein. (146 aa)    
Predicted Functional Partners:
CKAN_02167100
Protein SCAI.
      
 0.499
CKAN_01738400
Pentatricopeptide repeat-containing protein.
      
 0.444
CKAN_01321300
RING-type E3 ubiquitin transferase.
      
 0.433
CKAN_00890400
Succinate dehydrogenase assembly factor 4, mitochondrial.
      
 0.432
CKAN_02416200
Protein-lysine N-methyltransferase CKAN_02416200; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM4 family.
      
 0.431
CKAN_02169400
Uncharacterized protein.
      
 0.428
CKAN_01626000
Protein SCAI isoform X1.
      
 0.426
CKAN_01109200
Putative phytosulfokines 6.
      
 0.416
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.