STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02316600Uncharacterized protein. (171 aa)    
Predicted Functional Partners:
CKAN_01859900
Protein TRANSPARENT TESTA GLABRA 1.
   
 
 0.831
CKAN_00265600
WD40 protein.
   
 
 0.831
CKAN_00635600
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.
   
 
 0.784
CKAN_01450700
Phosphatidylinositol 3-/4-kinase; Belongs to the PI3/PI4-kinase family.
    
 0.673
CKAN_01022500
Peptidyl-prolyl cis-trans isomerase.
    
  0.633
CKAN_02147700
Peptidyl-prolyl cis-trans isomerase.
    
  0.633
CKAN_00838400
SANT/Myb domain-containing protein.
    
 0.621
CKAN_01602900
Small ubiquitin-related modifier.
    
 0.615
CKAN_00854800
Small ubiquitin-related modifier.
    
 0.615
CKAN_02583300
Acid phosphatase/vanadium-dependent haloperoxidase-related.
    
 0.615
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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