STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02781900ATPase_AAA_core domain-containing protein; Probable ATPase of unknown function. Its presence in a non- photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis; Belongs to the Ycf2 family. (1190 aa)    
Predicted Functional Partners:
CKAN_02588300
KAT8 regulatory NSL complex subunit 3.
    
 0.902
CKAN_01046200
Forkhead-associated FHA domain-containing protein.
    
 0.822
CKAN_01477200
Forkhead-associated FHA domain-containing protein.
    
 0.822
CKAN_02526800
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.818
CKAN_00654500
F-box-like/WD repeat-containing protein TBL1XR1.
    
 
 0.786
CKAN_02501500
SET domain-containing protein.
    
 0.781
CKAN_00452000
Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY.
   
 0.674
CKAN_01317400
PAH domain-containing protein/Sin3_corepress domain-containing protein.
    
 0.656
CKAN_02015000
Paired amphipathic helix protein Sin3-like protein 4 isoform X1.
    
 0.656
CKAN_00652800
WD_REPEATS_REGION domain-containing protein.
    
 0.615
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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