STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_0160490015-cis-zeta-carotene isomerase. (374 aa)    
Predicted Functional Partners:
CKAN_00620900
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
  
 0.969
CKAN_00999000
Phytoene dehydrogenase.
  
  
 0.958
CKAN_00513400
Polyamine oxidase 1.
     
 0.764
CKAN_02286900
Lysine-specific histone demethylase 1 2.
     
 0.764
CKAN_01782400
Flavin amine oxidase.
     
 0.764
CKAN_01899700
Lysine-specific histone demethylase 1 1.
     
 0.764
CKAN_02113300
Protein FLOWERING LOCUS D.
     
 0.764
CKAN_00709900
Putative polyamine oxidase 4 isoform X1.
     
 0.764
CKAN_01782200
Flavin amine oxidase.
     
 0.764
CKAN_02158300
Amine oxidase.
     
 0.764
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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