Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CKAN_00367800 | CKAN_00945800 | A0A443N9V0 | A0A3S4NRY1 | Replication protein A subunit B. | DNA excision repair protein ERCC-1 isoform X1. | 0.829 |
CKAN_00367800 | CKAN_01579200 | A0A443N9V0 | A0A3S3PAV2 | Replication protein A subunit B. | ATP-dependent DNA helicase mph1 isoform X1. | 0.907 |
CKAN_00367800 | CKAN_01650000 | A0A443N9V0 | A0A3S3NH61 | Replication protein A subunit B. | PPC domain-containing protein. | 0.454 |
CKAN_00367800 | CKAN_01688800 | A0A443N9V0 | A0A443PAW6 | Replication protein A subunit B. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.758 |
CKAN_00367800 | MED6 | A0A443N9V0 | A0A3S3NEM5 | Replication protein A subunit B. | Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.758 |
CKAN_00838400 | CKAN_01650000 | A0A3S3Q5N6 | A0A3S3NH61 | SANT/Myb domain-containing protein. | PPC domain-containing protein. | 0.552 |
CKAN_00945800 | CKAN_00367800 | A0A3S4NRY1 | A0A443N9V0 | DNA excision repair protein ERCC-1 isoform X1. | Replication protein A subunit B. | 0.829 |
CKAN_00945800 | CKAN_01209300 | A0A3S4NRY1 | A0A3S3MVQ9 | DNA excision repair protein ERCC-1 isoform X1. | Replication protein A subunit A. | 0.829 |
CKAN_00945800 | CKAN_01209400 | A0A3S4NRY1 | A0A443NXX0 | DNA excision repair protein ERCC-1 isoform X1. | Replication protein A subunit A. | 0.829 |
CKAN_00945800 | CKAN_01579200 | A0A3S4NRY1 | A0A3S3PAV2 | DNA excision repair protein ERCC-1 isoform X1. | ATP-dependent DNA helicase mph1 isoform X1. | 0.987 |
CKAN_00945800 | CKAN_01650000 | A0A3S4NRY1 | A0A3S3NH61 | DNA excision repair protein ERCC-1 isoform X1. | PPC domain-containing protein. | 0.454 |
CKAN_00945800 | CKAN_02467800 | A0A3S4NRY1 | A0A443PX49 | DNA excision repair protein ERCC-1 isoform X1. | NPL4-like protein 2. | 0.991 |
CKAN_01209300 | CKAN_00945800 | A0A3S3MVQ9 | A0A3S4NRY1 | Replication protein A subunit A. | DNA excision repair protein ERCC-1 isoform X1. | 0.829 |
CKAN_01209300 | CKAN_01579200 | A0A3S3MVQ9 | A0A3S3PAV2 | Replication protein A subunit A. | ATP-dependent DNA helicase mph1 isoform X1. | 0.907 |
CKAN_01209300 | CKAN_01650000 | A0A3S3MVQ9 | A0A3S3NH61 | Replication protein A subunit A. | PPC domain-containing protein. | 0.454 |
CKAN_01209300 | CKAN_01688800 | A0A3S3MVQ9 | A0A443PAW6 | Replication protein A subunit A. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.758 |
CKAN_01209300 | MED6 | A0A3S3MVQ9 | A0A3S3NEM5 | Replication protein A subunit A. | Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.758 |
CKAN_01209400 | CKAN_00945800 | A0A443NXX0 | A0A3S4NRY1 | Replication protein A subunit A. | DNA excision repair protein ERCC-1 isoform X1. | 0.829 |
CKAN_01209400 | CKAN_01579200 | A0A443NXX0 | A0A3S3PAV2 | Replication protein A subunit A. | ATP-dependent DNA helicase mph1 isoform X1. | 0.907 |
CKAN_01209400 | CKAN_01650000 | A0A443NXX0 | A0A3S3NH61 | Replication protein A subunit A. | PPC domain-containing protein. | 0.454 |
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