STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02136200Gag-protease-integrase-RT-RNaseH polyprotein. (916 aa)    
Predicted Functional Partners:
CKAN_00838400
SANT/Myb domain-containing protein.
    
 0.552
CKAN_01579200
ATP-dependent DNA helicase mph1 isoform X1.
 
  
 0.544
CKAN_00790100
Uncharacterized protein.
  
     0.536
CKAN_02712200
Retrotransposon polyprotein.
  
     0.534
CKAN_01955300
Retrovirus-related Pol polyprotein from transposon TNT 1-94.
  
     0.534
CKAN_01456800
Retrovirus-related Pol polyprotein from transposon TNT 1-94; Belongs to the glycosyltransferase 2 family.
  
     0.526
CKAN_00673700
Uncharacterized protein.
  
     0.521
CKAN_01783700
Retrovirus-related Pol polyprotein from transposon TNT 1-94.
  
     0.516
CKAN_02467800
NPL4-like protein 2.
    
  0.487
CKAN_02437200
Putative 39S ribosomal L53, mitochondrial.
  
     0.481
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.