STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02494600ABC transporter A family member 8-like protein isoform X1. (956 aa)    
Predicted Functional Partners:
CKAN_02513100
Beta galactosidase small chain/ domain-containing protein; Belongs to the glycosyl hydrolase 2 family.
   
 
  0.780
CKAN_02437500
Cytochrome c oxidase assembly protein COX15.
    
 0.720
CKAN_00635600
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.
  
 0.667
CKAN_00334100
Basic salivary proline-rich protein 3.
    
 0.530
CKAN_00933500
3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.
     
 0.530
CKAN_01364100
Enolpyruvate transferase domain-containing protein.
     
 0.530
CKAN_00780300
3-dehydroquinate synthase, chloroplastic-like protein isoform X1.
     
 0.530
CKAN_00820000
Cell number regulator 2-like protein.
    
 0.530
CKAN_02289500
Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic.
     
 0.530
CKAN_02289400
Dehydroquinase class I.
     
 0.530
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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