CKAN_01747500 protein (Cinnamomum micranthum)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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Score

CKAN_01747500

Glutathione S-transferase T2-like protein. (209 aa)

Predicted Functional Partners:

CKAN_02202300

0.944

CKAN_01929200

0.944

CKAN_00725300

0.859

CKAN_00201600

0.830

CKAN_00308100

0.830

CKAN_00842800

0.830

CKAN_01165800

0.830

CKAN_02421800

0.830

CKAN_02576300

0.823

CKAN_02538700

0.752

Your Current Organism:

Cinnamomum micranthum

NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CKAN_00201600	CKAN_00725300	A0A3S3MC69	A0A3S3MSA1	Uncharacterized protein.	Elongation factor 1-gamma 2.	0.999
CKAN_00201600	CKAN_01747500	A0A3S3MC69	A0A3S3NIV9	Uncharacterized protein.	Glutathione S-transferase T2-like protein.	0.830
CKAN_00201600	CKAN_01929200	A0A3S3MC69	A0A3S4PGQ4	Uncharacterized protein.	Putative methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.404
CKAN_00201600	CKAN_02202300	A0A3S3MC69	A0A3S3PKP5	Uncharacterized protein.	tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.404
CKAN_00308100	CKAN_00725300	A0A3S3ME44	A0A3S3MSA1	Elongation factor 1-beta-like protein; Belongs to the EF-1-beta/EF-1-delta family.	Elongation factor 1-gamma 2.	0.999
CKAN_00308100	CKAN_01165800	A0A3S3ME44	A0A443NWK4	Elongation factor 1-beta-like protein; Belongs to the EF-1-beta/EF-1-delta family.	Elongation factor 1-delta 1; Belongs to the EF-1-beta/EF-1-delta family.	0.491
CKAN_00308100	CKAN_01747500	A0A3S3ME44	A0A3S3NIV9	Elongation factor 1-beta-like protein; Belongs to the EF-1-beta/EF-1-delta family.	Glutathione S-transferase T2-like protein.	0.830
CKAN_00308100	CKAN_01929200	A0A3S3ME44	A0A3S4PGQ4	Elongation factor 1-beta-like protein; Belongs to the EF-1-beta/EF-1-delta family.	Putative methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.404
CKAN_00308100	CKAN_02202300	A0A3S3ME44	A0A3S3PKP5	Elongation factor 1-beta-like protein; Belongs to the EF-1-beta/EF-1-delta family.	tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.404
CKAN_00308100	CKAN_02421800	A0A3S3ME44	A0A443PVY4	Elongation factor 1-beta-like protein; Belongs to the EF-1-beta/EF-1-delta family.	Elongation factor 1-delta-like protein; Belongs to the EF-1-beta/EF-1-delta family.	0.490
CKAN_00725300	CKAN_00201600	A0A3S3MSA1	A0A3S3MC69	Elongation factor 1-gamma 2.	Uncharacterized protein.	0.999
CKAN_00725300	CKAN_00308100	A0A3S3MSA1	A0A3S3ME44	Elongation factor 1-gamma 2.	Elongation factor 1-beta-like protein; Belongs to the EF-1-beta/EF-1-delta family.	0.999
CKAN_00725300	CKAN_00842800	A0A3S3MSA1	A0A3S3NHK4	Elongation factor 1-gamma 2.	Elongation factor 1-beta 2; Belongs to the EF-1-beta/EF-1-delta family.	0.999
CKAN_00725300	CKAN_01165800	A0A3S3MSA1	A0A443NWK4	Elongation factor 1-gamma 2.	Elongation factor 1-delta 1; Belongs to the EF-1-beta/EF-1-delta family.	0.999
CKAN_00725300	CKAN_01747500	A0A3S3MSA1	A0A3S3NIV9	Elongation factor 1-gamma 2.	Glutathione S-transferase T2-like protein.	0.859
CKAN_00725300	CKAN_01929200	A0A3S3MSA1	A0A3S4PGQ4	Elongation factor 1-gamma 2.	Putative methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.986
CKAN_00725300	CKAN_02202300	A0A3S3MSA1	A0A3S3PKP5	Elongation factor 1-gamma 2.	tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.986
CKAN_00725300	CKAN_02421800	A0A3S3MSA1	A0A443PVY4	Elongation factor 1-gamma 2.	Elongation factor 1-delta-like protein; Belongs to the EF-1-beta/EF-1-delta family.	0.999
CKAN_00725300	CKAN_02538700	A0A3S3MSA1	A0A3S3P8Q6	Elongation factor 1-gamma 2.	Fumarylacetoacetase.	0.752
CKAN_00725300	CKAN_02576300	A0A3S3MSA1	A0A3S3R992	Elongation factor 1-gamma 2.	Homogentisate 1,2-dioxygenase.	0.823

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Network Stats

number of nodes:

11

number of edges:

26

average node degree:

4.73

avg. local clustering coefficient:

0.678

expected number of edges:

11

PPI enrichment p-value:

5.51e-05

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006508

Proteolysis

5 of 171

1.25

0.85

0.0073

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008658

Penicillin binding

5 of 7

2.63

4.47

2.90e-09

GO:0004180

Carboxypeptidase activity

4 of 10

2.38

3.21

5.78e-07

GO:0008955

Peptidoglycan glycosyltransferase activity

2 of 4

2.48

1.38

0.0029

GO:0008233

Peptidase activity

5 of 144

1.32

1.3

0.00021

GO:0004185

Serine-type carboxypeptidase activity

2 of 6

2.3

1.24

0.0050

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1006

Penicillin binding

3 of 5

2.56

2.08

0.00014

CL:974

Cell shape, and Penicillin binding

4 of 21

2.06

2.07

7.26e-05

CL:4744

Mixed, incl. Beta-lactamase/transpeptidase-like, and Glycoside hydrolase, family 3, N-terminal

3 of 28

1.81

1.18

0.0042

CL:4779

Beta-lactamase, and Serine-type exopeptidase activity

2 of 6

2.3

1.0

0.0142

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00550

Peptidoglycan biosynthesis

9 of 41

2.12

6.26

2.85e-16

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005886

Plasma membrane

6 of 582

0.79

0.43

0.0487

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0328

Glycosyltransferase

5 of 54

1.75

2.27

4.49e-06

KW-0121

Carboxypeptidase

3 of 10

2.26

2.08

0.00010

KW-0132

Cell division

3 of 43

1.62

1.19

0.0027

KW-0131

Cell cycle

3 of 43

1.62

1.19

0.0027

KW-0378

Hydrolase

7 of 553

0.88

0.76

0.00052

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00905

Penicillin binding protein transpeptidase domain

5 of 7

2.63

4.5

2.55e-09

PF00912

Transglycosylase

2 of 2

2.78

1.24

0.0056

PF00144

Beta-lactamase

2 of 9

2.13

0.79

0.0341

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR012338

Beta-lactamase/transpeptidase-like

9 of 24

2.35

7.34

5.78e-17

IPR001460

Penicillin-binding protein, transpeptidase

5 of 7

2.63

4.45

3.19e-09

IPR036950

Penicillin binding protein transglycosylase domain

2 of 2

2.78

1.12

0.0094

IPR001264

Glycosyl transferase, family 51

2 of 2

2.78

1.12

0.0094

IPR036138

Penicillin-binding protein, dimerisation domain superfamily

2 of 3

2.6

1.11

0.0094

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