CKAN_02298900 protein (Cinnamomum micranthum)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

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Score

CKAN_02298900

Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family. (167 aa)

Predicted Functional Partners:

CYN

0.985

CKAN_00287700

0.977

CKAN_02424100

0.977

CKAN_01041000

0.958

CKAN_01756000

0.958

CKAN_00249000

0.908

CKAN_02066100

0.908

CKAN_01186000

0.908

CKAN_02553700

0.908

CKAN_02681600

0.908

Your Current Organism:

Cinnamomum micranthum

NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CKAN_00249000	CKAN_00287700	A0A3S3NS69	A0A3S3MIT6	Thylakoidal processing peptidase 1, chloroplastic-like protein.	Putative signal peptidase complex subunit 1.	0.922
CKAN_00249000	CKAN_01186000	A0A3S3NS69	A0A3S4NY07	Thylakoidal processing peptidase 1, chloroplastic-like protein.	Peptidase S26A.	0.881
CKAN_00249000	CKAN_02066100	A0A3S3NS69	A0A3S3QY08	Thylakoidal processing peptidase 1, chloroplastic-like protein.	Mitochondrial inner membrane protease subunit 2 isoform X1.	0.463
CKAN_00249000	CKAN_02298900	A0A3S3NS69	A0A3S3NK48	Thylakoidal processing peptidase 1, chloroplastic-like protein.	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	0.908
CKAN_00249000	CKAN_02424100	A0A3S3NS69	A0A3S3N9C8	Thylakoidal processing peptidase 1, chloroplastic-like protein.	Putative signal peptidase complex subunit 1.	0.922
CKAN_00249000	CYN	A0A3S3NS69	A0A443Q0M4	Thylakoidal processing peptidase 1, chloroplastic-like protein.	Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.	0.948
CKAN_00287700	CKAN_00249000	A0A3S3MIT6	A0A3S3NS69	Putative signal peptidase complex subunit 1.	Thylakoidal processing peptidase 1, chloroplastic-like protein.	0.922
CKAN_00287700	CKAN_01041000	A0A3S3MIT6	A0A3S3MSP4	Putative signal peptidase complex subunit 1.	Signal peptidase I.	0.974
CKAN_00287700	CKAN_01186000	A0A3S3MIT6	A0A3S4NY07	Putative signal peptidase complex subunit 1.	Peptidase S26A.	0.922
CKAN_00287700	CKAN_01756000	A0A3S3MIT6	A0A443PCP0	Putative signal peptidase complex subunit 1.	Signal peptidase I.	0.974
CKAN_00287700	CKAN_02066100	A0A3S3MIT6	A0A3S3QY08	Putative signal peptidase complex subunit 1.	Mitochondrial inner membrane protease subunit 2 isoform X1.	0.922
CKAN_00287700	CKAN_02298900	A0A3S3MIT6	A0A3S3NK48	Putative signal peptidase complex subunit 1.	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	0.977
CKAN_00287700	CKAN_02553700	A0A3S3MIT6	A0A443PZL3	Putative signal peptidase complex subunit 1.	Peptidase S26A.	0.922
CKAN_00287700	CKAN_02681600	A0A3S3MIT6	A0A443Q2Y6	Putative signal peptidase complex subunit 1.	Peptidase S26A.	0.922
CKAN_00287700	CYN	A0A3S3MIT6	A0A443Q0M4	Putative signal peptidase complex subunit 1.	Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.	0.989
CKAN_01041000	CKAN_00287700	A0A3S3MSP4	A0A3S3MIT6	Signal peptidase I.	Putative signal peptidase complex subunit 1.	0.974
CKAN_01041000	CKAN_02298900	A0A3S3MSP4	A0A3S3NK48	Signal peptidase I.	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	0.958
CKAN_01041000	CKAN_02424100	A0A3S3MSP4	A0A3S3N9C8	Signal peptidase I.	Putative signal peptidase complex subunit 1.	0.974
CKAN_01041000	CYN	A0A3S3MSP4	A0A443Q0M4	Signal peptidase I.	Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.	0.989
CKAN_01186000	CKAN_00249000	A0A3S4NY07	A0A3S3NS69	Peptidase S26A.	Thylakoidal processing peptidase 1, chloroplastic-like protein.	0.881

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Network Stats

number of nodes:

11

number of edges:

40

average node degree:

7.27

avg. local clustering coefficient:

0.903

expected number of edges:

11

PPI enrichment p-value:

4.2e-11

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006470

Protein dephosphorylation

8 of 57

2.16

5.57

1.43e-13

GO:0043170

Macromolecule metabolic process

11 of 2223

0.71

0.68

3.88e-06

GO:0006807

Nitrogen compound metabolic process

11 of 2993

0.58

0.51

5.64e-05

GO:0044238

Primary metabolic process

11 of 3334

0.54

0.46

0.00017

GO:0044237

Cellular metabolic process

11 of 3770

0.48

0.4

0.00058

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004722

Protein serine/threonine phosphatase activity

8 of 59

2.15

5.56

1.13e-13

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016020

Membrane

10 of 2676

0.59

0.48

0.00057

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:18076

Protein dephosphorylation, and Transposase IS605, OrfB, C-terminal

9 of 48

2.29

7.02

1.12e-16

CL:18086

Protein dephosphorylation, and Transposase IS605, OrfB, C-terminal

7 of 24

2.48

6.6

2.76e-14

CL:18078

Protein dephosphorylation, and Transposase IS605, OrfB, C-terminal

8 of 42

2.3

6.52

3.37e-15

CL:18088

Protein dephosphorylation, and Transposase IS605, OrfB, C-terminal

6 of 18

2.54

5.84

2.48e-12

CL:18090

Protein dephosphorylation, and Putative transposase DNA-binding domain

4 of 12

2.54

3.67

9.92e-08

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03070

Bacterial secretion system

8 of 105

1.9

4.44

1.45e-12

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0016021

Integral component of membrane

8 of 244

1.53

2.63

2.55e-09

GOCC:0016020

Membrane

10 of 1519

0.84

0.85

1.88e-06

GOCC:0110165

Cellular anatomical entity

11 of 5566

0.31

0.25

0.0301

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