STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02317000A1 cistron-splicing factor. (421 aa)    
Predicted Functional Partners:
CKAN_00408300
Pre-mRNA-processing-splicing factor 8A.
    
 
 0.975
CKAN_01371500
U5 small nuclear ribonucleoprotein component CLO.
    
 
 0.963
CKAN_00243600
Protein ecdysoneless.
    
 
 0.921
CKAN_00243500
Protein ecdysoneless isoform X1.
    
 
 0.921
CKAN_02221900
CD2 antigen cytoplasmic tail-binding protein 2 isoform X1.
   
 
 0.906
CKAN_01658700
Zinc finger HIT domain-containing protein 2 isoform X1.
    
 
 0.871
CKAN_02695200
Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.
    
 
 0.856
CKAN_00412500
DnaJ domain-containing protein.
    
 
 0.853
CKAN_00282700
Small nuclear ribonucleoprotein-associated protein B.
    
 
 0.843
CKAN_01201200
DEAD domain-containing protein/Helicase_C domain-containing protein.
    
 
 0.836
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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